Species Diversity Research Articles

Identity, pathogenicity and genetic diversity of Lasiodiplodia associated with stem-end rot of avocado in China.

Stem-end rot (SER) causes brown necrotic lesions in the pulp near the base of the fruit pedicel and is one of the most devastating postharvest diseases of avocados in all avocado growing regions of the world. China's avocado industry is growing very rapidly, and the planting area is expanding, but little is known about the pathogens and genetic diversity of avocado SER. To determine the causal agents of SER, avocado fruits were sampled from the main avocado-producing areas in China during 2020 and 2021. Fungal isolates were obtained from SER symptomatic avocado fruits and identified by morphology combined with phylogenetic analysis of internal transcribed spacer (ITS), translation elongation factor 1-α (EF1-α) and β-tubulin (TUB2) gene sequences. All 101 isolates belonged to Lasiodiplodia spp., and four Lasiodiplodia species were identified, namely L. pseudotheobromae (59.41%), L. theobromae (24.75%), L. mahajangana (7.92%), L. euphorbiaceicola (1.98%), and six others are classified as Lasiodiplodia sp. (5.94%). There were only slight morphological differences in colonies and conidia of these four species of Lasiodiplodia. The pathogenicity tests showed symptoms of SER, and the 92.08% of the isolates exhibited a high level of virulence on avocado (disease index > 70), related to the disease severity on avocado fruit. All tested isolates grew well under conditions from 23 to 33℃. There was a significant difference in mycelial growth between the four species of Lasiodiplodia after treatment with high temperature or low temperature. L. pseudotheobromae growth was the fastest at 13 to 18℃, but was the lowest at 38℃ (P < 0.05). Red pigment could be produced by all tested isolates after culturing for 7 days at 38℃. The mycelial growth rate was the fastest on PDA medium, and the slowest on OMA medium but promoted spore formation (P < 0.05). In addition, was determined the genetic diversity of Lasiodiplodia pathogenic species associated with SER collected from avocado, mango, guava and soursop fruits was determined. A total of 74 isolates were clustered into 4 main ISSR groups by unweighted pair-group method with arithmetic mean (UPGMA) analysis, and the classification of this group was related to the host. Extensive diversity was detected in the Lasiodiplodia populations. The diverse geographical origins and host species significantly influenced the population differentiation, and most of the genetic variation occurred within populations (P < 0.001). This is the first study to identify the major pathogens of avocado SER in China and to survey their occurrence, pathogenicity and include a comparative analysis of genetic diversity with Lasiodiplodia spp. causing SER on other fruit hosts. Collectively, the Lasiodiplodia species complex affecting avocado showed high pathogenicity and diversity, while L. pseudotheobromae was the most frequently isolated species in China. The results of this study provide insights into the aspects of epidemic of SER disease caused by Lasiodiplodia species, which will help in developing strategies for the management and control of stem end-rot in avocado.

Old role with new feature: T2SS ATPase as a cyclic-di-GMP receptor to regulate antibiotic production.

Cyclic di-GMP (c-di-GMP) is a crucial signaling molecule found extensively in bacteria, involved in the regulation of various physiological and biochemical processes such as biofilm formation, motility, and pathogenicity through binding to downstream receptors. However, the structural dissimilarity of c-di-GMP receptor proteins has hindered the discovery of many such proteins. In this study, we identified LspE, a homologous protein of the type II secretion system (T2SS) ATPase GspE in Lysobacter enzymogenes, as a receptor protein for c-di-GMP. We identified the more conservative c-di-GMP binding amino acid residues as K358 and T359, which differ from the previous reports, indicating that GspE proteins may represent a class of c-di-GMP receptor proteins. Additionally, we found that LspE in L. enzymogenes also possesses a novel role in regulating the production of the antifungal antibiotic HSAF. Further investigations revealed the critical involvement of both ATPase activity and c-di-GMP binding in LspE-mediated regulation of HSAF (Heat-Stable Antifungal Factor) production, with c-di-GMP binding having no impact on LspE's ATPase activity. This suggests that the control of HSAF production by LspE encompasses two distinct processes: c-di-GMP binding and the inherent ATPase activity of LspE. Overall, our study unraveled a new function for the conventional protein GspE of the T2SS as a c-di-GMP receptor protein and shed light on its role in regulating antibiotic production.IMPORTANCEThe c-di-GMP signaling pathway in bacteria is highly intricate. The identification and functional characterization of novel receptor proteins have posed a significant challenge in c-di-GMP research. The type II secretion system (T2SS) is a well-studied secretion system in bacteria. In this study, our findings revealed the ATPase GspE protein of the T2SS as a class of c-di-GMP receptor protein. Notably, we discovered its novel function in regulating the production of antifungal antibiotic HSAF in Lysobacter enzymogenes. Given that GspE may be a conserved c-di-GMP receptor protein, it is worthwhile for researchers to reevaluate its functional roles and mechanisms across diverse bacterial species.

Hidden Treasure: Halophilic Fungi as a Repository of Bioactive Lead Compounds

The pressing demand for novel compounds to address contemporary health challenges has prompted researchers to venture into uncharted territory, including extreme ecosystems, in search of new natural pharmaceuticals. Fungi capable of tolerating extreme conditions, known as extremophilic fungi, have garnered attention for their ability to produce unique secondary metabolites crucial for defense and communication, some of which exhibit promising clinical significance. Among these, halophilic fungi thriving in high-salinity environments have particularly piqued interest for their production of bioactive molecules. This review highlights the recent discoveries regarding novel compounds from halotolerant fungal strains isolated from various saline habitats. From diverse fungal species including Aspergillus, Penicillium, Alternaria, Myrothecium, and Cladosporium, a plethora of intriguing molecules have been elucidated, showcasing diverse chemical structures and bioactivity. These compounds exhibit cytotoxicity against cancer cell lines such as A549, HL60, and K-562, antimicrobial activity against pathogens like Escherichia coli, Bacillus subtilis, and Candida albicans, as well as radical-scavenging properties. Notable examples include variecolorins, sclerotides, alternarosides, and chrysogesides, among others. Additionally, several compounds display unique structural motifs, such as spiro-anthronopyranoid diketopiperazines and pentacyclic triterpenoids. The results emphasize the significant promise of halotolerant fungi in providing bioactive compounds for pharmaceutical, agricultural, and biotechnological uses. However, despite their potential, halophilic fungi are still largely unexplored as sources of valuable compounds.

Morphological diversity in true and false crabs reveals the plesiomorphy of the megalopa phase.

Brachyura and Anomala (or Anomura), also referred to as true and false crabs, form the species-rich and globally abundant group of Meiura, an ingroup of Decapoda. The evolutionary success of both groups is sometimes attributed to the process of carcinization (evolving a crab-like body), but might also be connected to the megalopa, a specific transitional larval phase. We investigate these questions, using outline analysis of the shields (carapaces) of more than 1500 meiuran crabs. We compare the morphological diversity of different developmental phases of major ingroups of true and false crabs. We find that morphological diversity of adults is larger in false crabs than in true crabs, indicating that taxonomic diversity and morphological diversity are not necessarily linked. The increasing morphological disparity of adults of true and false crabs with increasing phylogenetic distance furthermore indicates diverging evolution of the shield morphology of adult representatives of Meiura. Larvae of true crabs also show larger diversity than their adult counterparts, highlighting the importance of larvae for biodiversity studies. The megalopa phase of Meiura appears to be plesiomorphic, as it overlaps between true and false crabs and shows little diversity. Causes may be common evolutionary constraints on a developmental phase specialized for transitioning.

Resilience of Aboveground Biomass of Secondary Forests Following the Abandonment of Gold Mining Activity in the Southeastern Peruvian Amazon

Amazon rainforests are critical for providing a wide range of ecosystem services. In the Southeastern Peruvian Amazon; however, goldmining activities are causing severe soil degradation and forest loss. We analyzed aboveground biomass (AGB), forest structure, and species diversity recovery during secondary succession in 179 forest plots. Our study provides the first field-based quantification of AGB recovery following the abandonment by two types of goldmining (heavy machinery and suction pumping) in Madre de Dios (Peru). We found that successional secondary forests in areas subjected to suction pumping were more resilient than those in areas subjected to heavy machinery. After 20 years, mean AGB in suction pumping mining areas had reached 56% of reference forest AGB, while in areas of heavy machinery mining it was only 18%. Mining type, stand age, and distance from the forest edge had a significant effect on AGB. The influence of the distance from the forest edge on AGB varies according to mining type because the effects of species diversity on AGB are mediated by the distance from the forest edge. Our results clearly showed the dynamics of AGB recovery across a secondary succession after goldmining, and the contrasting responses of AGB between the two mining types. Our study disentangles the importance of key factors in forest recovery after mining and improves understanding of the resilience of biomass accumulation in these highly degraded ecosystems.

Impacts of fire and prospects for recovery in a tropical peat forest ecosystem

Uncontrolled fires place considerable burdens on forest ecosystems, compromising our ability to meet conservation and restoration goals. A poor understanding of the impacts of fire on ecosystems and their biodiversity exacerbates this challenge, particularly in tropical regions where few studies have applied consistent analytical techniques to examine a broad range of ecological impacts over multiyear time frames. We compiled 16 y of data on ecosystem properties (17 variables) and biodiversity (21 variables) from a tropical peatland in Indonesia to assess fire impacts and infer the potential for recovery. Burned forest experienced altered structural and microclimatic conditions, resulting in a proliferation of nonforest vegetation and erosion of forest ecosystem properties and biodiversity. Compared to unburned forest, habitat structure, tree density, and canopy cover deteriorated by 58 to 98%, while declines in species diversity and abundance were most pronounced for trees, damselflies, and butterflies, particularly for forest specialist species. Tracking ecosystem property and biodiversity datasets over time revealed most to be sensitive to recurrent high-intensity fires within the wider landscape. These megafires immediately compromised water quality and tree reproductive phenology, crashing commercially valuable fish populations within 3 mo and driving a gradual decline in threatened vertebrates over 9 mo. Burned forest remained structurally compromised long after a burn event, but vegetation showed some signs of recovery over a 12-y period. Our findings demonstrate that, if left uncontrolled, fire may be a pervasive threat to the ecological functioning of tropical forests, underscoring the importance of fire prevention and long-term restoration efforts, as exemplified in Indonesia.

Characterization and identification of long-chain hydrocarbon-degrading bacterial communities in long-term chronically polluted soil in Ogoniland: an integrated approach using culture-dependent and independent methods.

Escalating oil consumption has resulted in an increase in accidental spills of petroleum hydrocarbons, causing severe environmental degradation, notably in vulnerable regions like the Niger Delta. Complex mixture of these hydrocarbons particularly long-chain alkanes presents unique challenges in restoration of polluted environment due to their chemical properties. This study aimed to investigate the long-chain hydrocarbon-degrading bacterial communities within long-term chronically polluted soil in Ogoniland, by utilizing both traditional cultivation methods and modern culture-independent techniques. Results revealed that surface-polluted soil (SPS) and subsurface soil (SPSS) exhibit significantly higher total organic carbon (TOC) ranging from 5.64 to 5.06% and total petroleum hydrocarbons (TPH) levels ranging from 36,775ppm to 14,087ppm, compared to unpolluted soil (UPS) with 1.97% TOC and 479ppm TPH, respectively. Analysis of carbon chain lengths reveals the prevalence of longer-chain alkanes (C20-28) in the surface soil. Culture-dependent methods, utilizing crude oil enrichment (COE) and paraffin wax enrichment (PWE), yield 47 bacterial isolates subjected to a long-chain alkane degradation assay. Twelve bacterial strains demonstrate significant degradation abilities across all enriched media. Three bacterial members, namely Pseudomonas sp. (almA), Marinomonas sp. (almA), and Alteromonas (ladA), exhibit genes responsible for long-chain alkane degradation, demonstrating efficiency between 50 and 80%. Culture-independent analysis reveals that surface SPS samples exhibit greater species richness and diversity compared to subsurface SPSS samples. Proteobacteria dominates as the phylum in both soil sample types, ranging from 22.23 to 82.61%, with Firmicutes (0.2-2.22%), Actinobacteria (0.4-3.02%), and Acidobacteria (0.1-3.53%) also prevalent. Bacterial profiles at genus level revealed that distinct variations among bacterial populations between SPS and SPSS samples comprising number of hydrocarbon degraders and the functional predictions also highlight the presence of potential catabolic genes (nahAa, adh2, and cpnA) in the polluted soil. However, culture-dependent analysis only captured a few of the dominant members found in culture-independent analysis, implying that more specialized media or environments are needed to isolate more bacterial members. The findings from this study contribute valuable information to ecological and biotechnological aspects, aiding in the development of more effective bioremediation applications for restoring oil-contaminated environments.

High-quality, chromosome-level reference genomes of the viviparous Caribbean skinks Spondylurus nitidus and S. culebrae.

New World mabuyine skinks are a diverse radiation of morphologically cryptic lizards with unique reproductive biologies. Recent studies examining population-level data (morphological, ecological, and genomic) have uncovered novel biodiversity and phenotypes, including the description of dozens of new species and insights into the evolution of their highly complex placental structures. Beyond the potential for this diverse group to serve as a model for the evolution of viviparity in lizards, much of the taxonomic diversity is concentrated in regions experiencing increasing environmental instability from climate and anthropogenic change. Consequently, a better understanding of genome structure and diversity will be an important tool in the adaptive management and conservation of this group. Skinks endemic to Caribbean islands are particularly vulnerable to global change with several species already considered likely extinct and several remaining species either endangered or threatened. Combining PacBio long-read sequencing, Hi-C, and RNAseq data, here we present the first genomic resources for this group by describing new chromosome-level reference genomes for the Puerto Rican Skink Spondylurus nitidus and the Culebra Skink S. culebrae. Results indicate two high quality genomes, both ∼1.4 Gb, assembled nearly telomere-to-telomere with complete mitochondrion assembly and annotation.

Chlamydiae in corals: shared functional potential despite broad taxonomic diversity

Abstract Cnidarians, such as corals and sea anemones, associate with a wide range of bacteria that have essential functions, including nutrient cycling and the production of antimicrobial compounds. Within cnidarians, bacteria can colonize all microhabitats including the tissues. Among them are obligate intracellular bacteria of the phylum Chlamydiota (chlamydiae) whose impact on cnidarian hosts and holobionts, especially corals, remain unknown. Here, we conducted a meta-analysis of previously published 16S rRNA gene metabarcoding data from cnidarians (e.g., coral, jellyfish, anemones), eight metagenome-assembled genomes (MAGs) of coral-associated chlamydiae, and one MAG of jellyfish-associated chlamydiae to decipher their diversity and functional potential. While the metabarcoding dataset showed an enormous diversity of cnidarian-associated chlamydiae, six out of nine MAGs were affiliated with the Simkaniaceae family. The other three MAGs were assigned to the Parasimkaniaceae, Rhabdochlamydiaceae, and Anoxychlamydiaceae, respectively. All MAGs lacked the genes necessary for an independent existence, lacking any nucleotide or vitamin and most amino acid biosynthesis pathways. Hallmark chlamydial genes, such as a type III secretion system, nucleotide transporters, and genes for host interaction, were encoded in all MAGs. Together these observations suggest an obligate intracellular lifestyle of coral-associated chlamydiae. No unique genes were found in coral-associated chlamydiae, suggesting a lack of host specificity. Additional studies are needed to understand how chlamydiae interact with their coral host, and other microbes in coral holobionts. This first study of the diversity and functional potential of coral-associated chlamydiae improves our understanding of both the coral microbiome and the chlamydial lifestyle and host range.

Natural Diversity of Cuticular Pheromones in a Local Population of Drosophila after Laboratory Acclimation

Experimental studies of insects are often based on strains raised for many generations in constant laboratory conditions. However, laboratory acclimation could reduce species diversity reflecting adaptation to varied natural niches. Hydrocarbons covering the insect cuticle (cuticular hydrocarbons; CHCs) are reliable adaptation markers. They are involved in dehydration reduction and protection against harmful factors. CHCs can also be involved in chemical communication principally related to reproduction. However, the diversity of CHC profiles in nature and their evolution in the laboratory have rarely been investigated. Here, we sampled CHC natural diversity in Drosophila melanogaster flies from a particular location in a temperate region. We also measured cis-Vaccenyl acetate, a male-specific volatile pheromone. After trapping flies using varied fruit baits, we set up 21 D. melanogaster lines and analysed their pheromones at capture and after 1 to 40 generations in the laboratory. Under laboratory conditions, the broad initial pheromonal diversity found in male and female flies rapidly changed and became more limited. In some females, we detected CHCs only reported in tropical populations: the presence of flies with a novel CHC profile may reflect the rapid adaptation of this cosmopolitan species to global warming in a temperate area.

Yeast communities of a North American hybrid wine grape differ between organic and conventional vineyards.

To compare the species diversity and composition of indigenous yeast communities of hybrid grapes from conventionally and organically cultivated vineyards of an emerging cool-climate wine producing region. Illumina MiSeq sequences from L'Acadie blanc grape musts were processed and filtered to characterize indigenous yeast communities in organic and conventional vineyards of the Annapolis Valley wine region in Nova Scotia, Canada. While cultivation practice was not associated with yeast diversity or species richness, there was a strong effect on yeast community composition, with conventional vineyards characterized by higher proportions of Sporidiobolales and Filobasidium magnum, and organic vineyards supporting Filobasidium species other than F. magnum and higher proportions of Symmetrospora. There was also variation in yeast community composition among individual vineyards, and from year to year. This is the first comprehensive assessment of yeasts associated with hybrid grapes grown using different cultivation practices in a North American cool climate wine region. Communities were dominated by basidiomycete yeasts and species composition of these yeasts differed significantly between vineyards employing organic and conventional cultivation practices. The role of basidiomycete yeasts in winemaking is not well understood, but some species may influence wine characteristics.

The effects of recreational footpaths on terrestrial invertebrate communities in a UK ancient woodland: a case study from Blean Woods, Kent, UK

ABSTRACT Globally, terrestrial invertebrates are in decline, in part due to habitat fragmentation. Footpaths provide nature-based recreation to the public but can present small-scale spatially continuous changes in forest dynamics. However, their effects on terrestrial invertebrate communities are unknown. Pitfall trapping was undertaken to identify whether terrestrial invertebrate communities were disrupted by a popular recreational footpath in Blean Woods, an ancient UK woodland. The study identified 720 invertebrates across 36 taxa from 20 footpath edge and forest interior traps. It was found that footpaths did not significantly affect terrestrial invertebrate communities. There was no difference in the taxonomic abundance, richness, and diversity; invertebrate trait abundance and richness; or invertebrate community composition between the footpath edge and woodland interior traps. Thus, footpaths in Blean Woods do not disturb the terrestrial invertebrate community, and therefore present a sustainable mechanism for facilitating public engagement with conservation in a nationally important protected ancient woodland.

Contemporary Wildfires Not More Severe Than Historically: More Fire of All Severities Needed to Sustain and Adapt Western US Dry Forests as Climate Changes

Fire-adapted dry forests and nearby communities both need to be sustained as climate changes. Wildfires have increased in the ~25.5 million ha of dry forests in the western US, but are wildfires already more severe than historical (preindustrial) wildfires, warranting suppression, or is more fire needed? Recent research suggests that a higher percentage are more severe, but is this from more high-severity fire (≥70% mortality) or simply less lower-severity fire? To resolve this question, I compared government fire-severity data from 2000–2020 with corresponding government Landfire historical data, representing the last few centuries. The fire rotation (expected time to burn across an area of interest) for high-severity fire was 477 years recently versus 255 years historically, a deficit, not a surplus. High-severity fire would need to increase 1.9 times to equal historical rates. Thus, reducing high-severity fire through fuel reductions is fire suppression, which has significant well-known adverse ecological impacts. These include reductions in (1) natural burn patches, snags, and non-forest openings, that favor diverse fire-adapted species, and (2) landscape heterogeneity that can limit future disturbances and enhance landscape ecological processes. Even larger deficits were in moderate (4.4 times) and low (5.8 times) fire severities. However, if only these lower severities were restored, the high-severity percentage would correspondingly be reduced to low levels. All fire severities are needed to provide a variety of post-fire settings that favor a broad suite of selection pressures and adaptations to emerging climate. This paper shows that to sustain and adapt dry forests and nearby communities to fire and climate change, the billions spent on fuel reductions to reduce high-severity fire can be redirected to protecting the built environment, fostering both safe and sustainable dry forests and human communities.

Population Genetic Assessment Model Reveals Conservation Priorities for Gymnocypris Species Resources on the Qinghai-Tibetan Plateau

The Qinghai-Tibetan Plateau (QTP) has nurtured a rich diversity of species because of its unique geographical and environmental conditions. Gymnocypris species (subfamily Schizopygopsinae) are primitive fishes that live in the special environment of the plateau, and their evolution and distribution are inseparable from the historical changes of the QTP. Recently, the resources of Gymnocypris species have been decreasing due to habit deterioration and the intensification of human activities. Therefore, the scientific conservation of the genetic resources of Gymnocypris species is urgently required. In this study, we established two models for the priority conservation assessment of germplasm resources of Gymnocypris species on the basis of the genetic diversity and phylogenetic relationships of 674 individuals from eight Gymnocypris species populations. The results show that the Gymnocypris potanini (GPO), Gymnocypris eckloni (GE), and Gymnocypris przewalskii (GPR) populations are the most genetically diverse in terms of combined genetic diversity values and should be prioritized for conservation. In terms of genetic contribution, the GPO, GE, and GPR populations have a positive impact on maintaining the distinctiveness and diversity of the entire Gymnocypris species population and should be prioritized for conservation. However, in terms of different evolutionary clades, the Gymnocypris namensis, Gymnocypris waddellii, Gymnocypris dobula, and GE populations in clade A should be given priority for protection, the GE population in clade B should be given priority, and the GPR population in clade C should be given priority. In conclusion, the two models and assessment of conservation priorities will provide a scientific basis for the conservation of Gymnocypris species.

Implementing a citizen science bird monitoring project in the Grampians/Gariwerd National Park, Victoria, Australia

ABSTRACT Global bird populations are threatened by ongoing habitat loss and climate change. Inconsistent and short-term funding of faunal surveys in Australia makes population and distribution changes difficult to detect. To meet this challenge, alternative methods of supplementing regular surveys by professional ornithologists have been proffered, including surveys by trained citizen scientists. Here we outline the development, implementation and assessment of the Great Gariwerd Bird Survey (GGBS), a citizen science (CS) monitoring project designed to address long-term management questions in vulnerable Stringybark Heathy Woodland in Grampians/Gariwerd National Park. Forty volunteers that met appropriate criteria were selected and trained in practical 10-week/40-h courses. We assessed data from 288 2-ha/20-min surveys undertaken in autumn and spring 2021 at 36 sites, ran workshops to improve surveyor skills and data quality and assessed trainee experiences and program content through online anonymous surveys. Concurrent professional field ornithologist surveys enabled cross validation of CS surveys. Overlapping species accumulation curves for professional and citizen scientist surveys reflected very high correlations for site species diversity (r = 0.836) and abundances (r = 0.768). In autumn, the professional surveyor recorded significantly more species and birds than CS surveyors. Additional training in the identification of cryptic birds and challenging calls partially addressed the numerical differences in the following spring survey. This project demonstrates the potential for valuable long-term ecological data collection by well-trained citizen scientists with benefits to community environmental knowledge and participation despite some manageable obstacles. Participant surveys showed highly positive program perceptions, reflected by ongoing involvement in the GGBS.

Crayfish communities converge over succession in beaver pond metacommunities

Abstract Metacommunity theory predicts that the relative importance of regional and local processes structuring communities will change over ecological succession. Determining effects of these processes on taxonomic and evolutionary diversity in spatially structured freshwater habitats of different successional stages may greatly improve understanding of the maintenance of diversity across temporal and spatial scales. In this study, we evaluated crayfish diversity at local and regional scales in pond metacommunities undergoing secondary succession from beaver (Castor canadensis) disturbance. Following theoretical predictions from metacommunity ecology of the increasing importance of local processes over succession, we hypothesised a decline in crayfish local and β diversity over succession from stronger local structuring as the older ponds may provide less suitable habitat than streams. Crayfish species and phylogenetic diversity were evaluated in beaver pond metacommunities and reference headwater streams located in three catchment regions. DNA sequences from the mitochondrial cytochrome oxidase I gene were used to assign crayfish to species for community and phylogenetic diversity tests. Local and β diversity were contrasted across beaver ponds ranging in age from 24 to 70 years and as a function of metacommunity processes. Counter to predictions, local species diversity among streams and the successional stages of ponds categorised by age class (24–39 years; 42–57 years; 60–70 years) did not differ, but community and phylogenetic convergence occurred in the oldest pond ecosystems. Crayfish community composition differed between the youngest and oldest ponds, resulting from higher abundance in the youngest ponds and community convergence in the oldest ponds. The association between community composition and the environment was strongest in streams and decoupled with pond age. In contrast, the correlation between intraspecific haplotype composition and the environment increased over succession. Among the three metacommunities, the regional crayfish species diversity arose from a combination of the temporal and environmental drivers from beaver‐constructed ecosystems and dispersal limitation within catchments. This study represents the first investigation of the taxonomic and phylogenetic diversity response to the successional stages of beaver pond metacommunities. The detection of differential crayfish composition and haplotype sorting to pond age suggests a role for local structuring and further indicates that future studies should acknowledge succession in shaping species diversity at local and regional scales. Dispersal limitation within catchment regions probably contributes to the evolution of crayfish species diversity in metacommunities and the overall maintenance of biodiversity. The results support a transition in community and freshwater ecology from a recent emphasis on spatial processes towards the integration of temporal drivers to better identify regulators of taxonomic and phylogenetic diversity across scales.

Plant Community Composition and Structural Pattern Dynamics in Robe-Raya Natural Forest, Southeast Ethiopia

Due to its fortuitous mix of geography, terrain, and geology, Ethiopia is the home of unique assemblages of rich biodiversity. However, this impressive biological diversity is increasingly threatened by the combined effects of different drivers before they are sufficiently investigated. The present work was carried out in Robe-Raya Natural Forest, located in Southeast Ethiopia, with the intention of examining plant community formation and structural dynamics of the forest species. Sixty (20 m × 20 m) quadrats were placed at 100 m distance along eleven east-west directed transect lines systematically. In order to gather juvenile’s data, five subquadrats (2 m × 2 m) were established within the main quadrat, distributed at each corner and middle. In each quadrat, all woody species were recorded and counted; diameter (DBH) and height were measured using tape meter and a hypsometer, respectively, and cover abundance was recorded (in %). Cluster analysis was computed using R-Package to map-out the community types. Species diversity and composition among community types were computed using the Shannon-Wiener index and Sorenson’s coefficient, respectively. Frequency, density, height, DBH, basal area, and IVI were used to analyze structural dynamics. Age-class density ratios were used to examine the regeneration status. Ninety-four woody plant species belonging to 39 families were documented. Asteraceae was the most species-rich family (10 species). The common growth form was shrubs (44.7%) followed by trees (41.5%). Cluster analysis produced four community types. In total, the species diversity and evenness were 3.75 and 0.88, respectively. The forest density and basal area were 1183.3 stems/ha and 57.52 m2·ha−1, respectively. Structural dynamics analyses demonstrated that the forest was composed of, largely, young trees and shrubs and under fair regeneration status. Certain species that have been identified to have low IVI and poor regeneration status should be prioritized for conservation.

Spruce dieback as chance for biodiversity: standing deadwood promotes beetle diversity in post-disturbance stands in western Germany

AbstractAnthropogenic climate change poses a major threat to ecosystems and their biodiversity. Forests, for example, are suffering from climate-amplified disturbances like droughts or pest outbreaks. Throughout Europe, such disturbances resulted in large-scale diebacks of managed spruce stands in recent years. While such stands are often salvage-logged to reduce economic losses, it is still rather unclear how post-disturbance management affects forest biodiversity in anthropogenic spruce stands. By comparing epigeal beetle communities among salvage-logged sites, standing deadwood patches, and succession areas, we show that spruce dieback can be a chance for biodiversity conservation. Even though individual beetle families responded partly differently to post-disturbance management, standing deadwood enhanced the overall diversity of ground-dwelling beetles compared to salvage logging, while succession sites were intermediate. We also show that community composition and functional guilds vary strongly between management categories.Implications for insect conservation: We suggest to set-aside areas of standing deadwood for natural succession to enhance beetle taxonomic and functional diversity, especially of deadwood-dependent species. As different types of management support different species assemblages, well-planned post-disturbance management, including a partial abandonment of salvage logging and a consideration of natural succession, may counter biodiversity losses in forests.

Vertical stratification and defensive traits of caterpillars against parasitoids in a lowland tropical forest in Cameroon.

Insect herbivores and their parasitoids play a crucial role in terrestrial trophic interactions in tropical forests. These interactions occur across the entire vertical gradient of the forest. This study compares how caterpillar communities, and their parasitism rates, vary across vertical strata and between caterpillar defensive strategies in a semi deciduous tropical forest in Nditam, Cameroon. Within a 0.1ha plot, all trees with a diameter at breast height (DBH) ≥ 5cm were felled and systematically searched for caterpillars. We divided the entire vertical gradient of the forest into eight, five-metre strata. All caterpillars were assigned to a stratum based on their collection height, reared, identified, and classified into one of three defensive traits: aposematic, cryptic and shelter-building. Caterpillar species richness and diversity showed a midstory peak, whereas density followed the opposite pattern, decreasing in the midstory and then increasing towards the highest strata. This trend was driven by some highly dense shelter-building caterpillars in the upper canopy. Specialisation indices indicated decreasing levels of caterpillar generality with increasing height, a midstory peak in vulnerability, and increasing connectance towards the upper canopy, although the latter was likely driven by decreasing network size. Both aposematic and shelter-building caterpillars had significantly higher parasitism rates than cryptic caterpillars. Our results highlight nuanced changes in caterpillar communities across forest strata and provide evidence that defences strategies are important indicators of parasitism rates in caterpillars and that both aposematic and shelter-building caterpillars could be considered a "safe haven" for parasitoids.

Climbing mechanisms as a central trait to understand the ecology of lianas across the tropics

AbstractAimsLianas are a central component of tropical forests. However, how the type of climbing mechanisms is related to the functional and taxonomic diversity of lianas across the tropics, remains largely unresolved. Here, we tested two main hypotheses: (i) the functional diversity of lianas differs with climbing mechanism (active and passive) and (ii) the association between taxonomic diversity with contemporary climate, paleoclimate, forest structure and phylogeny differ between climbing mechanisms.LocationTropical forests.Time PeriodPresent.Major Taxa StudiedTerrestrial plants.MethodsWe assembled functional traits and the type of climbing mechanism for 702 liana species and used the World Checklist of Vascular Plants (WCVP v.2.0) to standardize species names, map geographical distribution and estimate taxonomic richness. We used kernel density n‐dimensional hypervolume to estimate the functional diversity of each type of climbing mechanism. We compared the environmental response of taxonomic richness of each type of climbing mechanism, active and passive, to the response of overall liana species richness. We assessed the magnitude and direction of the environmental response considering variables of climate, soil fertility and forest structure.ResultsWe found that active climbing exhibits a higher functional richness than passive climbing. Richness patterns of active and passive climbing mechanisms were mainly driven by contemporary climate, paleoclimate and phylogenetic relatedness. More importantly, paleoclimate was negatively associated with active climbing and positively associated with passive climbing.Main ConclusionsOur study highlights differences in functional diversity (richness, dispersion, evenness and originality) between active and passive climbing species, likely reflecting their distinct ecological strategies for resource use, stress tolerance and dispersal. Integrating taxonomic and functional diversity metrics with information about the type of climbing mechanism provides deeper insights into the ecology and response of lianas to climate change.